Index A | B | C | D | E | F | H | I | M | N | R | S | T | V | W A add_atom() (cosmolkit.MoleculeEdit method) add_bond() (cosmolkit.MoleculeEdit method) add_hydrogens() (cosmolkit.MoleculeBatch method) as_dict() (cosmolkit.BatchError method) Atom (class in cosmolkit) atoms() (cosmolkit.Molecule method) B BatchError (class in cosmolkit) BatchExportReport (class in cosmolkit) BatchValidationError Bond (class in cosmolkit) bonds() (cosmolkit.Molecule method) C commit() (cosmolkit.MoleculeEdit method) compute_2d_coords() (cosmolkit.MoleculeBatch method) coords_2d() (cosmolkit.Molecule method) coords_3d() (cosmolkit.Molecule method) cosmolkit module D dg_bounds_matrix() (cosmolkit.Molecule method) dg_bounds_matrix_list() (cosmolkit.MoleculeBatch method) E edit() (cosmolkit.Molecule method) error_type() (cosmolkit.BatchError method) errors() (cosmolkit.BatchExportReport method) (cosmolkit.MoleculeBatch method) F failed() (cosmolkit.BatchExportReport method) filter_valid() (cosmolkit.MoleculeBatch method) find_chiral_centers() (cosmolkit.Molecule method) from_rdkit() (cosmolkit.Molecule class method) from_sdf_record_strings() (cosmolkit.MoleculeBatch class method) from_smiles() (cosmolkit.Molecule class method) from_smiles_list() (cosmolkit.MoleculeBatch class method) H has_2d_coords() (cosmolkit.Molecule method) I index() (cosmolkit.BatchError method) input() (cosmolkit.BatchError method) invalid_count() (cosmolkit.MoleculeBatch method) invalid_mask() (cosmolkit.MoleculeBatch method) M message() (cosmolkit.BatchError method) module cosmolkit Molecule (class in cosmolkit) MoleculeBatch (class in cosmolkit) MoleculeEdit (class in cosmolkit) N num_atoms() (cosmolkit.Molecule method) num_bonds() (cosmolkit.Molecule method) num_conformers() (cosmolkit.Molecule method) R read_sdf() (cosmolkit.Molecule class method) read_sdf_record_from_str() (cosmolkit.Molecule class method) read_sdf_records_from_str() (cosmolkit.Molecule class method) remove_hydrogens() (cosmolkit.MoleculeBatch method) S sanitize() (cosmolkit.MoleculeBatch method) set_atom_charge() (cosmolkit.MoleculeEdit method) stage() (cosmolkit.BatchError method) success() (cosmolkit.BatchExportReport method) T tetrahedral_stereo() (cosmolkit.Molecule method) to_images() (cosmolkit.MoleculeBatch method) to_sdf() (cosmolkit.MoleculeBatch method) to_sdf_string() (cosmolkit.Molecule method) to_smiles() (cosmolkit.Molecule method) to_smiles_list() (cosmolkit.MoleculeBatch method) to_svg() (cosmolkit.Molecule method) to_svg_list() (cosmolkit.MoleculeBatch method) total() (cosmolkit.BatchExportReport method) V valid_count() (cosmolkit.MoleculeBatch method) valid_mask() (cosmolkit.MoleculeBatch method) W with_2d_coords() (cosmolkit.Molecule method) with_hydrogens() (cosmolkit.Molecule method) with_kekulized_bonds() (cosmolkit.Molecule method) (cosmolkit.MoleculeBatch method) without_hydrogens() (cosmolkit.Molecule method) write_png() (cosmolkit.Molecule method) write_sdf() (cosmolkit.Molecule method) write_sdf_to_directory() (cosmolkit.Molecule method) write_svg() (cosmolkit.Molecule method)